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如何阅读文献在肿瘤学方面有哪些好的杂志如何快速阅读文献以获取知识论文的主要结构肿瘤的分子信号转导
+genomicinstabilityfromHanahanandWeinberg2000SignalTransductionandCancerLectureI:GrowthFactorsandReceptorsOutline:WhatisSignalTransduction? WhatareGrowthFactors?HowdotheycontributetonormalST?HowisthisSTderegulatedinCancer?LectureI:GrowthFactorsandReceptorsWhatisSignalTransduction?SignalTransductionistheprocessbywhichacellconvertsanextracellularsignalintoaresponse.Involvedin:Cell-cellcommunicationCell’sresponsetoenvironmentIntracellularhomeostatsis-internalcommunicationGenericSignallingPathwaySignalReceptor(sensor)TransductionCascadeTargetsResponseAlteredMetabolismMetabolicEnzymeGeneRegulatorCytoskeletalProteinAlteredGeneExpressionAlteredCellShapeorMotilityAdaptedfromMolecularBiologyoftheCell,(2002),4thedition,Albertsetal.ComponentsofSignallingWhatcanbetheSignal?ExternalmessagetothecellPeptides/Proteins-GrowthFactorsAminoacidderivatives-epinephrine,histamineOthersmallbiomolecules-ATPSteroids,prostaglandinsGases-NitricOxide(NO)PhotonsDamagedDNAOdorants,tastantsSignal=LIGANDLigand-Amoleculethatbindstoaspecificsiteonanothermolecule,usuallyaprotein,iereceptorComponentsofSignallingWhatareReceptors?Sensors,whatthesignal/ligandbindstoinitiateSTCellsurface
Intracellular
Hydrophillic
LigandCell-SurfaceReceptorPlasmamembraneHydrophobicLigandCarrierProteinIntracellularReceptorNucleusAdaptedfromMolecularBiologyoftheCell,(2002),4thedition,Albertsetal.CellSurfaceReceptorTypes:Ligand-gatedionchannelCellSurfaceReceptorTypes:2)G-ProteinCoupledReceptorCellSurfaceReceptorTypes:3)Enzyme-linkedReceptoregGrowthFactorReceptorsGrowthFactorsLigandswhichbindenzymelinkedreceptorsSignaldiversecellularresponsesincluding:ProliferationDifferentiationGrowthSurvivalAngiogenesisCansignaltomultiplecelltypesorbespecificFactorPrincipalSourcePrimaryActivityCommentsPDGFplatelets,endothelialcells,placentapromotesproliferationofconnectivetissue,glialandsmoothmusclecellstwodifferentproteinchainsform3distinctdimerforms;AA,ABandBBEGFsubmaxillarygland,Brunnersglandpromotesproliferationofmesenchymal,glialandepithelialcells
TGF-commonintransformedcellsmaybeimportantfornormalwoundhealingrelatedtoEGFFGFwiderangeofcells;proteinisassociatedwiththeECMpromotesproliferationofmanycells;inhibitssomestemcells;inducesmesodermtoforminearlyembryosatleast19familymembers,4distinctreceptorsNGF
promotesneuriteoutgrowthandneuralcellsurvivalseveralrelatedproteinsfirstidentifiedasproto-oncogenes;trkA(trackA),trkB,trkCErythropoietinkidneypromotesproliferationanddifferentiationoferythrocytes
TGF-activatedTH1cells(T-helper)andnaturalkiller(NK)cellsanti-inflammatory(suppressescytokineproductionandclassIIMHCexpression),promoteswoundhealing,inhibitsmacrophageandlymphocyteproliferationatleast100differentfamilymembersIGF-IprimarilyliverpromotesproliferationofmanycelltypesrelatedtoIGF-IIandproinsulin,alsocalledSomatomedinCIGF-IIvarietyofcellspromotesproliferationofmanycelltypesprimarilyoffetaloriginrelatedtoIGF-IandproinsulinGrowthFactorReceptorsMostgrowthfactorsbindReceptorTyrosineKinasesGrowthFactorReceptorActivationIRTKRS/TKGrowthFactorReceptorActivationIIGrowthsignalautonomy,Insensitivitytoanti-growthsignals,Resistancetoapoptosis:Uncouplecell’sgrowthprogramfromsignalsintheenvironment.Growthfactorsinnormalcellsserveasenvironmentalsignals.GrowthFactorSTandCancerGrowthfactorsregulategrowth,proliferation,andsurvival.Theseareallderegulatedincancer.HanahanandWeinberg,(2000)HallmarksofCancer,Cell(100)57GrowthfactorswithOncogenicPotentialPDGF,originallyshowntoregulateproliferation,wasalsoshowntohavehomologytov-sis,thesimiansarcomavirus.OtherviraloncogenesencodedproteinproductsthatweregrowthfactorsthatoftenoverexpressedincancersuchasTGF-a.Autocrine
signallingleadstoderegulatedgrowth.
PDGFfamily Neurotrophins
Achain NGF Bchain(c-sis) BDNFFGFFamily NT3
acidicFGF Cytokines(Hematopoietic) basicFGF IL-2EGFFamily IL-3
EGF M-CSF TGF-a GM-CSF
GFReceptorswithOncogenicPotentialEGFR,kinaseactivitystimulatedbyEGF-1andTGF-ainvolvedincellgrowthanddifferentiation,waslinkedviasequencehomologytoaknownavianerythroblastosisvirusonocgene,v-erbB.Sincethen,manyoncogeneshavebeenshowntoencodeforGFRs.EGFRfamily InsulinReceptorfamily
erbB1(c-erbB) IGF-1(c-ros) erbB2(neu) Neurotrophins
FGFFamily NGFR(trk)
FGFR-1(fig) BDNFR(trk-B) FGFR-2(K-sam) NT3R(trk-C)PDGFRFamily
CSF-1R(c-fms) SLFR(c-kit) Inductionofcancerbyalternationsinseveraltypesofproteinsinvolvedincellgrowthcontrol
SignalTransductionandCancerLectureII:IntracellularSignallingOutline:Whataresomesignallingpathways? Whataretheircellbiologicaloutputs?Howdotheseresultinthecancerphenotype?Howcanweexploitsignallingpathwaysfortherapy?GenericSignal
TransductionRTKSignal
TransductionSignalTransductionDownstreameffectorsProteinSignalingModules(Domains)SH2andPTBbindtotyrosinephosphorylatedsitesSH3andWWbindtoproline-richsequencesPDZdomainsbindtohydrophobicresiduesattheC-terminioftargetproteinsPHdomainsbindtodifferentphosphoinositidesFYVEdomainsspecificallybindtoPdtlns(3)P(phosphatidylinositol3-phosphate)MechanismsforActivationofSignalingProteinsbyRTKsActivationbymembranetranslocationActivationbyaconformationalchangeActivationbytyrosinephosphorylationMechanismsforAttenuation&TerminationofRTKActivation1)Ligandantagonists2)Receptorantagonists3)Phosphorylationanddephosphorylation4)Receptorendocytosis5)Receptordegradationbytheubiquitin-proteosomepathwayActivationofMAPKPathwaysbyMultipleSignalsGrowth,differentiation,inflammation,apoptosis->tumorigenesisOverviewofMAPKSignalingPathwaysTheMAPKPathwayActivatedbyRTKPRTKST-PI3KpathwayProto-oncogenesthatEncodeforSignallingProteinsSerine/Threonine
Kinases
c-raffamily
akt
Non-receptorTyrosineKinases
src
ablReceptorassociatedbindingproteins
c-rasfamilyRasrecruitsRaftothemembraneSTintermediatescanbetargetsforanti-cancerdrugsKinases:RafSTintermediatescanbetargetsforanti-cancerdrugsKinases:Bcr-AblCellPatterningCellGrowthWntBMPHedgehogFGFWhataretheessentialelementsofanySignalingcascade?Signal–ligandDiffusibleorTetheredReceptorTransmembrane
(exceptforlipidsolubleligands)Transducers-effectorsTargetsGenesorCellularcomponentsWntSignalingPathwaySignalWntsReceptorFrizzledsTransducers-effectors
b-cateninTargetsGenes
cytoskeletonWingless(Wg):Drosophila
•morphogen
-diff.Concentrationsofligandelicitdifferent responsesinequivalentcells •morphogenicmovementsandcellfatedeterminants
•“Beposterior”-cellfate
•“divide”-proliferation
•developmentalabnormalitieswhengenedeletedTheSignal:WntSharmadescribesawinglessmutationin1973√Sharma,1973Wingless-anewmutantinD.melanogaster.D.I.S.50:134√SharmaandChopra,1976,Effectofthewingless(wg1)mutationonwingandhalteredevelopmentinDrosophilamelanogaster.Dev.Biol.48:461-465LateritwasclonedpositionallyIntegrationofMMTVcausesmammarytumorsinmiceTumorsarepregnancydependentMMTVhasasteroidenhancerMicedevelopbreasttumorsbutonlyduringlactationGenewasdesignated-Int-1(integrationofMMTV)OtherinsertionsitesoccurredatotherGFse.g.FGFTumorsexhibitdominantGainofFunctionLesson:Ectopicactivationofagene>hyperplasia=OncogeneWingless+int-1=WntFlywgandMouseInt-1arehomologsGenesarecloned.Sequenceissimilar
102030405060708090100HWnt-1MGLWALLPSWVSTTLLLALTALPAALAANS----SGR-----WWGIVNIASSTNLLTDSKSLQLVLEPSLQLLSR-KQRRLIRQNPGILHSVSGGLQSAVFlyWgMDISYIFVICLMALCSGGSSLSQVEGKQKSGRGRGSMWWGIAKVGEPNNITP-----IMYMDPAIHSTLRRKQRRLVRDNPGVLGALVKGANLAI110120130140150160170180190200HWnt-1RECKWQFRNRRWNCPT---APGPHLFGKIVNRGCRETAFIFAITSAGVTHSVARSCSEGSIESCTCDYRR--RGP----------GGPDWHWGGCSDNIDFlyWgSECQHQFRNRRWNCSTRNFSRGKNLFGKIVDRGCRETSFIYAITSAAVTHSIARACSEGTIESCTCDYSHQSRSPQANHQAGSVAGVRDWEWGGCSDNIG210220230240250260270280290300HWnt-1FGRLFGREFVDSGEKGRDLRFLMNLHNNEAGRTTVFSEMRQECKCHGMSGSCTVRTCWMRLPTLRAVGDVLRDRFDGASRVLYGN---------------FlyWgFGFKFSREFVDTGERGRNLREKMNLHNNEAGRAHVQAEMRQECKCHGMSGSCTVKTCWMRLANFRVIGDNLKARFDGATRVQVTNSLRATNALAPVSPNA310320330340350360370380390400HWnt-1RGSN----------------------------------------------------------RASR----------AELLRLEPEDPAHKPPSPHDLVYFFlyWgAGSNSVGSNGLIIPQSGLVYGEEEERMLNDHMPDILLENSHPISKIHHPNMPSPNSLPQAGQRGGRNGRRQGRKHNRYHFQLNPHNPEHKPPGSKDLVYL410420430440450460470HWnt-1EKSPNFCTYSGRLGTAGTAGRACNSSSPALDGCELLCCGRGHRTRTQRVTERCNCTFHWCCHVSCRNCTHTRVLHECLNFlyWgEPSPSFCEKNLRQGILGTHGRQCNETSLGVDGCGLMCCGRGYRRDEVVVVERCACTFHWCCEVKCKLCRTKKVIYTCLNTheSignal:Wnt•Secretedproteinligandsof80-100aa•Lipidmodified
Latestbreakthrough(2003):purificationofactiveWnt requiresorganicextraction!!•Shortrangeacting•Sticktoextracellularmatrix•Gradients---->morphogenic?•multipleWnts
(19inhuman/mouseand7inDrosophila)Wntssignalthroughserpentinereceptors2classesofsignalingreceptorsCatalyticTyrosineKinaseReceptors[RTKs]Ser/Thr
KinaseReceptors[BMPs]Serpentine/G-protein-coupled-receptors(GPCRs)/7-transmembraneWntsßadrenergic,dopamine,epinepherineetcTheReceptor:Frizzled•corereceptorforWnts•seven-passtransmembraneproteins•probablyG-proteincoupledreceptors•multipleFrizzleds
(10inhuman/mouseand4inDrosophila)•anewlyidentifiedco-receptorforWnts•singlepasstransmembraneprotein•relatedtofamilyoflipoproteinreceptorsLRP/arrow:WntSignalingregulatesgeneexpressionandcellpolaritycanonicalWntFzWntFzLrpLrpnon-canonicalCanonicalWntsignalingin2005/~rnusse/pathways/cell2//cgi/cm/CMP_5533b-cateninisthecytoplasmic-nuclearsignalingmediatorb-cateninb-catenin•armadilloinDrosophila
geneticsdeterminedthatitfunctioneddownstreamofWg•b-catenininmammaliansystemidentifiedascomponent ofcelladhesionjunctions•subcellularlocalizationofproteincontroversialforyears•purificationofb-cateninandcloningofgenein1991byP.McCraeandB.Gumbinershowedthatarmadilloandb-cateninareorthologuesThetransducer/effector:Armadillorepeatstructureofb-cateninLEF/TCFWntCK1GSK-3bAPCb-cateninaxinFrizzledLRPE-cadherinWntsignalingpathwayC.Liuetal.2002.Cell108:837.Complicatedphosphorylationcontrolsb-cateninstabilityHowdoesb-cateninreachtargetgenes?•LEF/TCFtranscriptionfactors•HMG(HighMobilityGroup)proteins•mammalianLEF-1andTCF-1identifiedinTlymphocytes in1991•twomoremembersclonedbylowstringencyscreeningofLibrariesanddegeneratePCRin1993•b-cateninwasusedinayeasttwo-hybridassayandLEF-1wasclonedasaninteractingproteinin1997 -endpointofthepathwaydetermined -mergedtwoindependentgroupsofscientists -subcellularlocalizationofb-catenin
finallysettledGeneralStructureofLEF/TCFTranscriptionFactorsb-catenin
bindingCo-repressorbindingDNAbinding/bendingalt.COOHTCF-1TCF-3TCF-4NLSHMGNLEF-1BBBEEE94%96%99%55%52%64%TargetGenesofWntSignaling•cellcycleregulatorsandtranscriptionfactors -c-MYC -cyclinD1•tissuespecificgenes•tissueremodelingproteins -matrixmetalloproteinases -ephrinreceptorsandligands -adhesionproteins•angiogenesis -VEGFIntheabsenceofWntsignaling:NLSHMGNLEF-1BNLSHMGNdnLEF-1BGrouchoLEF/TCFWntGSK-3baxinFrizzledLRPAPCLEF/TCFLEF/TCFLEF/TCFLEF/TCFLEF/TCFLEF/TCFLEF/TCFLEF/TCFActivationofLEF-1targetgenescantransformcellsAoki,M.etal.1999.Proc.Natl.Acad.Sci.USA.96:139-144anchorage-independentgrowthcontactinhibitioncolonyformationAdenomatous
PolyposisColi•IdentifiedbyJoannaGrodenandRayWhiteasatumorsuppressorgenesufferingLOHinfamilieswithveryhighratesofcoloncancer.•TruncationmutationsorlossoftheentiregeneoccursinmostSporadiccoloncancers•http:///~rnusse/wntwindow.htmHereditarycolorectalcancer(~15%)FamilialAdenomatous
Polyposis(FAP)-<1%allcolorectalCAGermlinemutationsinAPCgene.Acceleratedtumourinitiation.RatelimitingstepissomaticmutationinotherAPCalleleMedianageofcancerdiagnosis42yrs.Despitesharedgenotypes,notallclinicaldiseaseissimilar(diseasemodifyinggenesorenvironmentalinfluences?)Oftendevelopextracolonicmanifestations.MousemodelAPCminHereditaryNonPolyposisColorectalCancer(HNPCC)-2-4%allcolorectalCAMutationsinDNAmismatchrepair(MMR)genes-germline-genome-wide microsatelliteinstability(MI).Earlycluescamefrombacterialstudies.Adenomasformatthesamerateasthegeneralpopulation,butthereisacceleratedtumourprogressionMedianageofcancerdiagnosisalso42yrs.FAP HNPCC Sporadic Sporadic Adenomas CancersIncidence1:7000 1:500 1in2 1in20APCmutation>90% >80% >80%(prevalance) (germline) (somatic) (somatic)MMRdeficiency >90% <3% 13%(prevalance)MMRgene >70% ? ~65%mutationsAPCshuttlemode-speculativel
WntsignalingandcolorectalcancerMajorfunctionofAPCistheregulationofcelluar
b-cateninlevels.ActivationofwntpathwayincoloncancerdrivescellproliferationTcf-responsivegenes:
c-myc,cyclinD1,PPARd-fibronectinandmatrilysin(anextracellularmetalloproteinase)CNSMutationclusterregion-allresultinproteintruncationRacGEFGraybars-b-cateninbindingsites.APCmayplayaroleincell-celladhesion(Cadherins)Redbars-Axin/Conductinbindingsites(lostinmutations)Redarrows-nuclearexportsignals.MutantAPCaccumulatesinthenucleusAsefbindingactivatesRacatmembranes,inducingmembraneruffling thereforepossiblyaffectingcellmotilityMT-microtubulebindingsite.APCisinvolvedinlinkingmicrotubulestokinetochores thereforemutationscancontributetogenomicinstabilityb-catenindestructioncomplexAxinandAPCphysicallyinteract.APCmutationsincolonCAlackAxin bindingsites.-b-cateninbindstoAPC.APC/AxincomplexregulatesGSK3b
kinaseactivity.BindstoAxin. ThereforeAxinmayserveascaffoldingfunction.AxinandAPCarealsoGSK3bsubstrates,andphosphorylationincreases theirabilitytobindb-catenin.HowwntsignalsinhibitGSK3bactivityisunclear.Dishevellediscritical.WntsignalresultsindephosphorylationofAxinPP2Adephosphorylates
Axin.ItscatalyticsubunitbindsAxinwhileits regulatorysubunitbindsAPC.TheregulatorysubunitofPP2A ismutatedinasubsetofcolonCA.HowisPP2Aactivityregulated?-Whereistheintracellularlocalizationofthedestructioncomplex?APCmutationWildtypeAPCAPCmutationsresultinincreasedgenomicinstabilityMouseModel-APCminMultipleintestinalneoplasia(min).APCgenemutation.Truncatedproteinat
codon850.Htzhaveincreasedpropensityfortumors.Tumorsacquiresomaticmutation inwildtypeAPCallele.TumorslocatedinupperGItract(notcolorectal).Geneticbackgroundofmouseinfluencestumorload(?modifiers). MOM-1-possiblysecretedphospholipaseA2.APC1638TlacksC-terminaldomainthatbindstubulin,EB1-likeproteins. homozygousEScellshavehighdegreeofchromosomalinstability buthomozygousmicedoNOTexhibitincreasedtumorsusceptibilityCooperatingOncogenes.Cyclooxygenase2:deletionofCOX-2genesuppressesintestinalpolyposis inAPCD716mice.COX-2levelsareincreasedinpremalignantpolyps. ButCOX-2isexpressedininterstitialcellsnotintestinalepithelium.Smad4:deletionofSmad4inAPCD716miceresultedinmoreaggressive tumors(compoundhtzmice). HighlightstheroleofTGFsignalintumorprogression.DNAmethyltransferase:compoundhtzhavereducedpolypnumbers (epigeneticevents?).TumourProgressionTGFsignalingmutationsreceptorIImutationsdetectedinregionsofhighgradedysplasia
butabsentinadenomas.Intumourswithmicrosatelliteinstability(MI)mutationscorrelatewithprogressionofadenomastocancermutationsinTGFsignalingcomponents(e.g.,smad4)-nonMItumor accelerate/worsenmurine(APCmin)intestinalcancermodelCell-celladhesivecomplexmutations-cadherins,b-catenins,others?3.Metalloproteinaseactivation-matrilysinisatcf-responsivegenecompactionoftheearlyembryo-morphogeneticmovementofcells-establishmentofcellfates,andpolaritylossofcell-cellandcell-matrixrecognitiontissueinvasionmotilitynormaldevelopmentcancerprogression“epithelialmesenchymal”transitionHedgehogSignalingPathwaySignalHedgehogReceptorPatchedTransducers-effectors
Cubitus
InterruptusTargetsGenes
•MutationsinHedgehogsignalinginhumansembryosyieldscyclopia (aformofholoprosencephaly)imagesareonlyforthestout-hearted.•Inadults,mutationsinHedgehogsignalinggivesphenotypesinstemcellandprogenitorpopulations.Increasedsignalinggivestumors,lesssignalinggivesshort-livedstemcells•MostrecentadvanceisthatmanytumorsshowelevatedHhsignaling.Cyclopamine(firstobtainedfromthecornlily)haspromisefortherapeuticinterventionofcancer.TheSignal:Hedgehog•Secretedproteinligand-heavilyprocessed•Lipidmodifiedwithcholesterol•Shortrangeacting•Sticktoextracellularmatrix•Gradients---->morphogenic?•threeligandsinmammals:Indian,Desert,SonicThehedgehoggeneencodesanovelmembrane-linkedligandimportantforlocalpatterningofmanytissues.Theprimarytranslationproductcontainsasignalpeptidethatiscleavedtoproducea45kDapolypeptideprecursor.Cleavageofthissecretedprecursorproducesa20kDaN-terminalfragmentassociatedwiththeplasmamembraneandwithinductiveactivityplusa25kDafragment.TheN-terminalfragmentbecomestetheredtothemembraneviaahydrophobiccholesterolmoiety(itdoesn’tcontainanyhydrophobicresidues). Aseries
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